[OTDev] Super service for creating models , initial implementation
Nina Jeliazkova jeliazkova.nina at gmail.comWed Mar 30 15:51:47 CEST 2011
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Christoph, On 30 March 2011 16:18, Christoph Helma <helma at in-silico.ch> wrote: > > > Hi All, > > > > An initial implementation of the super service for creating models, > deployed > > on both of IDEA services. Details here > > > > > https://www.ideaconsult.net/web/ngn/blogs/-/blogs/opentox-model-superbuilder > > Thanks, this works so far! Do you have a shortcut for using e.g. _all_ > CDK descriptors or to get a list of descriptor calculation algorithms? > Otherwise it would be hard to prevent people from submitting eg. linear > regression as a descriptor calculation algorithm. > Every algorithm is assigned rdf:type from Algorithm Type ontology , you could get the list of all algorithms and do the SPARQL locally, or use. 1) shortcuts http://apps.ideaconsult.net:8080/ambit2/algorithm?type=http%3A%2F%2Fwww.opentox.org%2FalgorithmTypes.owl%23Descriptor http://apps.ideaconsult.net:8080/ambit2/algorithm?type=http%3A%2F%2Fwww.opentox.org%2FalgorithmTypes.owl%23Regression (look at the top links at http://apps.ideaconsult.net:8080/ambit2/algorithm , there are queries for different types) 2) Ontology service 2a)Using Blue Obelisk algorithms ontology (there are lot of RDF triples assigned to each BO entry, which might be useful to be presented to the user ) PREFIX ot:<http://www.opentox.org/api/1.1#> PREFIX ota:<http://www.opentox.org/algorithms.owl#> PREFIX owl:<http://www.w3.org/2002/07/owl#> PREFIX dc:<http://purl.org/dc/elements/1.1/> PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> PREFIX rdf:<http://www.w3.org/1999/02/22-rdf-syntax-ns#> PREFIX bo:< http://www.blueobelisk.org/ontologies/chemoinformatics-algorithms/#> select * where { ?Algorithm rdf:type ot:Algorithm. ?Algorithm bo:instanceOf ?BlueObeliskEntry . ?BlueObeliskEntry ?x ?y. } 2b) Using Algorithm Types ontology (this is a query to list all available types ) PREFIX ot:<http://www.opentox.org/api/1.1#> PREFIX ota:<http://www.opentox.org/algorithms.owl#> PREFIX owl:<http://www.w3.org/2002/07/owl#> PREFIX dc:<http://purl.org/dc/elements/1.1/> PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> PREFIX rdf:<http://www.w3.org/1999/02/22-rdf-syntax-ns#> select * where { ?Algorithm rdf:type ?a. ?Algorithm rdf:type ot:Algorithm. } Hope this helps, Nina > > Best regards, > Christoph > _______________________________________________ > Development mailing list > Development at opentox.org > http://www.opentox.org/mailman/listinfo/development >
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