[OTDev] Dataset features in Ontology
Nina Jeliazkova jeliazkova.nina at gmail.comThu Mar 31 12:10:48 CEST 2011
- Previous message: [OTDev] Dataset features in Ontology
- Next message: [OTDev] Dataset features in Ontology
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ]
On 31 March 2011 13:01, Christoph Helma <helma at in-silico.ch> wrote: > > > Christoph, > > > > Indeed there are no dataset features registered in the ontology service. > We > > might register some of course. > > > > The query I am using in ToxPredict is > > > > > http://apps.ideaconsult.net:8080/ambit2/dataset?feature_sameas=http%3A%2F%2Fwww.opentox.org%2FechaEndpoints.owl%23AcuteInhalationToxicity > > > > > > or in general : > > > > http://apps.ideaconsult.net:8080/ambit2/dataset?feature_sameas= > <urlencoded > > entry from ECHA endpoints ontology> > > > > > > There is also a set summary queries (recently introduced and not yet > > announced on the list), which are not in the API yet , but may be it make > > sense to include them somehow and invent RDF serialisation (there is only > > text/csv and text/html so far). > > > > http://apps.ideaconsult.net:8080/ambit2/query/ndatasets_endpoint > > > > Hope this helps, > > Thanks, this works as advertised! But how can I decide, which datasets > are ready for production use (e.g. to select the four relevant datasets > > dc:title "Benchmark Data Set for in Silico Prediction of Ames > Mutagenicity" ; > dc:title "Bursi mutagenicity dataset.sdf" ; > dc:title "CPDBAS: Carcinogenic Potency Database Summary Tables - All > Species" ; > dc:title "ISSCAN: Istituto Superiore di Sanita, CHEMICAL CARCINOGENS: > STRUCTURES AND EXPERIMENTAL DATA" ; > > from 247 mutagenicity datasets), if I do not know titles in advance? > There is currently no any metadata to handle it, let's agree on some RDF property to denote a "production use" and we'll include it it into /dataset/id/metadata ( read and update) , as recently was done for licenses. > I have also observed that the dataset counts from > http://apps.ideaconsult.net:8080/ambit2/query/ndatasets_endpoint differ > sometimes from the number of datasets retrieved by > http://apps.ideaconsult.net:8080/ambit2/dataset?feature_sameas= > <echa_entry>. > (Acute_toxicity_to_fish_lethality 15 vs 208, Mutagenicity 247 vs 248). > These should match, I'll be checking it. Best regards, Nina > > Best regards, > Christoph >
- Previous message: [OTDev] Dataset features in Ontology
- Next message: [OTDev] Dataset features in Ontology
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ]
More information about the Development mailing list