[OTDev] validation search functions with model
surajit ray mr.surajit.ray at gmail.comWed Aug 24 14:15:36 CEST 2011
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Hi, This ties in well with my earlier idea to have a service tracking model performance, feedback and validations all in one place. IHMO the developer/chemo-informatics person can specify a validation service [from a choice of a few reliable ones], and this choice should then be stored in a service which also collects other pertinent information about the model like usage statistics, client feedback etc. Cheers Surajit On 24 August 2011 16:58, Nina Jeliazkova <jeliazkova.nina at gmail.com> wrote: > Dear Christoph, > > On 24 August 2011 14:18, Christoph Helma <helma at in-silico.ch> wrote: > > > Dear Nina, > > > > I am not sure if Martin has replied already: > > > > > > > > > http://opentox.informatik.uni-freiburg.de/validation is the "official" > > validation service for all partners. For better load balancing we deploy > > additional services, e.g. webservices.in-silico.ch/validation for > > toxcreate.org, > > ot-test.in-silico.ch/validation for ot-test.in-silico.ch > > and most recently lazar-services.in-silico.ch/validation for > > lazar.in-silico.ch. > > > > Thank you. As ToxPredict operates with arbitrary model URIs, what we the > best way to find out where the validation (and reporting ) resources for > particular model resides ? The question concerns not only models, built by > ToxCreate , but any models, registered in the ontology service (and thus > used by ToxPredict). > > Perhaps we should agree on some linking between model , validation and > reports, if these don't exist already? > > Best regards, > Nina > > > > > > > Best regards, > > Christoph > > > > > > On Sat, 20 Aug 2011 08:05:39 +0300, Nina Jeliazkova < > > jeliazkova.nina at gmail.com> wrote: > > > Hi Martin, > > > > > > Thank you, Toxpredict issue tracker is now updated: > > > > > > https://sourceforge.net/tracker/?func=detail&aid=3394883&group_id=191756&atid=938657 > > > > > > I realized there are more than one validation service, e.g. those used > > > by ToxCreate are different form > > > http://opentox.informatik.uni-freiburg.de/validation. Given a model > > > URI, what would be the best way to find which validation service to > > > use? > > > > > > Best regards, > > > Nina > > > > > > On 15 August 2011 11:12, Martin Guetlein < > martin.guetlein at googlemail.com> > > wrote: > > > > Hi Nina, All, > > > > > > > > as discussed with Nina in Munich, the validation now supports two new > > search > > > > functions: > > > > > > > > Search crossvalidations with model, example: > > > > > > > http://opentox.informatik.uni-freiburg.de/validation/crossvalidation?model=http://opentox.informatik.uni-freiburg.de/model/189 > > > > This returns all crossvalidations that have been performed with the > > > > corresponding algorithm and trainingDataset of the model. > > > > > > > > Serach qmrf reports with model, example: > > > > > > > http://opentox.informatik.uni-freiburg.de/validation/reach_report/QMRF?model=http://opentox.informatik.uni-freiburg.de/model/189 > > > > This returns all qmrf reports created for the particular model. > > > > > > > > Best regards, > > > > Martin > > > > > > > > > > > > -- > > > > Dipl-Inf. Martin Gütlein > > > > Phone: > > > > +49 (0)761 203 7633 (office) > > > > +49 (0)177 623 9499 (mobile) > > > > Email: > > > > guetlein at informatik.uni-freiburg.de > > > > > > > _______________________________________________ > > > Development mailing list > > > Development at opentox.org > > > http://www.opentox.org/mailman/listinfo/development > > > _______________________________________________ > Development mailing list > Development at opentox.org > http://www.opentox.org/mailman/listinfo/development > -- Surajit Ray Partner www.rareindianart.com
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