Overview
The overall objective of the proposed project is to develop a framework, that provides a unified access to toxicity data, (Q)SAR models, procedures supporting validation and additional information that helps with the interpretation of (Q)SAR predictions. The proposed OpenTox framework will be accessible at three levels:
- A simple and intuitive interface for toxicological experts, that provides unified access to (Q)SAR predictions, toxicological data, (Q)SAR models and supporting information
- An expert interface for the streamlined development and validation of new (Q)SAR models
- An application programming interface (API) for the development, integration and validation of new (Q)SAR algorithms
The OpenTox framework will be developed as an open source project to optimize the dissemination and impact, to allow the inspection and review of algorithms and to attract external contributors. We will closely collaborate with related projects (e.g. OECD toolbox) and authorities to agree on common standards and to avoid duplicated and redundant work.
- Homepage: www.opentox.org
- Subprojects: AMBIT, DSSTox data for lazar, FreeTreeMiner, LibFminer, RUMBLE, Sens-it-iv internal database, Toxmatch, Toxtree, gSpan', iSAR, lazar, lazar plugin, lazar web interface, opentox-plugin
Issue tracking
- Deliverables: 35 open on 35
- Bugs: 2 open on 2
- Features: 13 open on 13
- Tests: 2 open on 2
Members
Workpackage leaders:
romualdo benigni, Nicki Douglas, Barry Hardy, Christoph Helma, Nina Jeliazkova, Andreas Karwath, Stefan Kramer
Consortium members:
Antreas Afantitis , Fabian Buchwald, Sunil Chawla, Sylvia Escher, David Gallagher, indira ghosh, Tobias Girschick, Tatyana Gloriozova, Martin Gütlein, Vedrin Jeliazkov, marek kralewski, Alexey Lagunin, Andreas Maunz, Georgia Melagraki, Sergey Novikov, Sergey Novikov, Vladimir Poroikov, Micha Rautenberg, Lothar Richter, Haralambos Sarimveis, Olga Tcheremenskaia, David Vorgrimmler, Alexey Zakharov
External developers:
Mark Bayliss, Barry Bunin, Felix Hammann, jeroen kazius, Hao Zhu
Latest news
Collection of existing software and data started
Partner Introduction Presentations
Now available in OpenTox Documents area.