[OTDev] ToxCreate integration of Ambit classification datasets
Martin Guetlein martin.guetlein at googlemail.comFri May 6 15:34:33 CEST 2011
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On Fri, May 6, 2011 at 3:23 PM, Nina Jeliazkova <jeliazkova.nina at gmail.com>wrote: > Hi Martin, > > > On 6 May 2011 15:57, Martin Guetlein <martin.guetlein at googlemail.com>wrote: > >> >> >> Hi Nina, >> >> I noticed the following, the property ot:acceptValue of feature/21573 is >> available here: >> >> curl http://apps.ideaconsult.net:8080/ambit2/dataset/9 -H >> "accept:application/turtle" >> >> <ot:Feature rdf:about=" >> http://apps.ideaconsult.net:8080/ambit2/feature/21573"> >> <rdf:type rdf:resource="http://www.opentox.org/api/1.1#NominalFeature >> "></rdf:type> >> <ot:acceptValue>3.0</ot:acceptValue> >> <ot:acceptValue>1.0</ot:acceptValue> >> <ot:acceptValue>2.0</ot:acceptValue> >> <rdf:type rdf:resource="http://www.opentox.org/api/1.1#NumericFeature >> "></rdf:type> >> <dc:creator>http://www.epa.gov/NCCT/dsstox/sdf_isscan_external.html >> </dc:creator> >> <ot:hasSource>ISSCAN_v3a_1153_19Sept08.1222179139.sdf</ot:hasSource> >> <owl:sameAs rdf:resource=" >> http://www.opentox.org/echaEndpoints.owl#Carcinogenicity"></owl:sameAs> >> <ot:units></ot:units> >> <dc:title>Canc</dc:title> >> >> but its missing here: >> >> curl http://apps.ideaconsult.net:8080/ambit2/dataset/9/features -H >> "accept:application/turtle" >> >> <ot:NumericFeature rdf:about="feature/21573"> >> <dc:creator>http://www.epa.gov/NCCT/dsstox/sdf_isscan_external.html >> </dc:creator> >> <ot:hasSource >> rdf:resource="dataset/ISSCAN_v3a_1153_19Sept08.1222179139.sdf"/> >> <owl:sameAs rdf:resource=" >> http://www.opentox.org/echaEndpoints.owl#Carcinogenicity"/> >> <ot:units></ot:units> >> <dc:title>Canc</dc:title> >> <rdf:type rdf:resource="http://www.opentox.org/api/1.1#NominalFeature >> "/> >> <rdf:type rdf:resource="http://www.opentox.org/api/1.1#Feature"/> >> </ot:NumericFeature> >> >> I would need acceptValue for validation purposes (and our dataset parsing >> routine uses the latter request for feature metadata). Could you fix that? >> >> > It will be not trivial, because ot:acceptValue depends on the dataset ... > You do receive the acceptValue when receiving the dataset though, so you > should have this information. > > Nina > > Hmm, but should not the acceptValue (e.g. the domain of a nominal feature) be independent of a dataset? I already noticed that your implementation works differently, as the accept value of the feature differs when limiting the number of compounds ( http://apps.ideaconsult.net:8080/ambit2/dataset/9?max=1<http://apps.ideaconsult.net:8080/ambit2/dataset/9>instead of http://apps.ideaconsult.net:8080/ambit2/dataset/9 ) <http://apps.ideaconsult.net:8080/ambit2/dataset/9> Best regards, Martin -- Dipl-Inf. Martin Gütlein Phone: +49 (0)761 203 8442 (office) +49 (0)177 623 9499 (mobile) Email: guetlein at informatik.uni-freiburg.de
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